Does multithreading emphasize memory fragmentation?

Ok, picked up the bait.

This is on a system with

Intel(R) Core(TM)2 Quad CPU    Q9550  @ 2.83GHz
4x5666.59 bogomips

Linux meerkat 2.6.35-28-generic-pae #50-Ubuntu SMP Fri Mar 18 20:43:15 UTC 2011 i686 GNU/Linux

gcc version 4.4.5

             total       used       free     shared    buffers     cached
Mem:       8127172    4220560    3906612          0     374328    2748796
-/+ buffers/cache:    1097436    7029736
Swap:            0          0          0

Naive run

I just ran it

time ./ompmemtest 
Id 0 about to release all memory: 258.144 MB
Id 0 done, total alloc'ed -1572.7MB 
Id 3 about to release all memory: 257.854 MB
Id 3 done, total alloc'ed -1569.6MB 
Id 1 about to release all memory: 257.339 MB
Id 2 about to release all memory: 257.043 MB
Id 1 done, total alloc'ed -1570.42MB 
Id 2 done, total alloc'ed -1569.96MB 

real    0m13.429s
user    0m44.619s
sys 0m6.000s

Nothing spectacular. Here is the simultaneous output of vmstat -S M 1

Vmstat raw data

procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu----
 0  0      0   3892    364   2669    0    0    24     0  701 1487  2  1 97  0
 4  0      0   3421    364   2669    0    0     0     0 1317 1953 53  7 40  0
 4  0      0   2858    364   2669    0    0     0     0 2715 5030 79 16  5  0
 4  0      0   2861    364   2669    0    0     0     0 6164 12637 76 15  9  0
 4  0      0   2853    364   2669    0    0     0     0 4845 8617 77 13 10  0
 4  0      0   2848    364   2669    0    0     0     0 3782 7084 79 13  8  0
 5  0      0   2842    364   2669    0    0     0     0 3723 6120 81 12  7  0
 4  0      0   2835    364   2669    0    0     0     0 3477 4943 84  9  7  0
 4  0      0   2834    364   2669    0    0     0     0 3273 4950 81 10  9  0
 5  0      0   2828    364   2669    0    0     0     0 3226 4812 84 11  6  0
 4  0      0   2823    364   2669    0    0     0     0 3250 4889 83 10  7  0
 4  0      0   2826    364   2669    0    0     0     0 3023 4353 85 10  6  0
 4  0      0   2817    364   2669    0    0     0     0 3176 4284 83 10  7  0
 4  0      0   2823    364   2669    0    0     0     0 3008 4063 84 10  6  0
 0  0      0   3893    364   2669    0    0     0     0 4023 4228 64 10 26  0

Does that information mean anything to you?

Google Thread Caching Malloc

Now for real fun, add a little spice

time LD_PRELOAD="/usr/lib/libtcmalloc.so" ./ompmemtest 
Id 1 about to release all memory: 257.339 MB
Id 1 done, total alloc'ed -1570.42MB 
Id 3 about to release all memory: 257.854 MB
Id 3 done, total alloc'ed -1569.6MB 
Id 2 about to release all memory: 257.043 MB
Id 2 done, total alloc'ed -1569.96MB 
Id 0 about to release all memory: 258.144 MB
Id 0 done, total alloc'ed -1572.7MB 

real    0m11.663s
user    0m44.255s
sys 0m1.028s

Looks faster, not?

procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu----
 4  0      0   3562    364   2684    0    0     0     0 1041 1676 28  7 64  0
 4  2      0   2806    364   2684    0    0     0   172 1641 1843 84 14  1  0
 4  0      0   2758    364   2685    0    0     0     0 1520 1009 98  2  1  0
 4  0      0   2747    364   2685    0    0     0     0 1504  859 98  2  0  0
 5  0      0   2745    364   2685    0    0     0     0 1575 1073 98  2  0  0
 5  0      0   2739    364   2685    0    0     0     0 1415  743 99  1  0  0
 4  0      0   2738    364   2685    0    0     0     0 1526  981 99  2  0  0
 4  0      0   2731    364   2685    0    0     0   684 1536  927 98  2  0  0
 4  0      0   2730    364   2685    0    0     0     0 1584 1010 99  1  0  0
 5  0      0   2730    364   2685    0    0     0     0 1461  917 99  2  0  0
 4  0      0   2729    364   2685    0    0     0     0 1561 1036 99  1  0  0
 4  0      0   2729    364   2685    0    0     0     0 1406  756 100  1  0  0
 0  0      0   3819    364   2685    0    0     0     4 1159 1476 26  3 71  0

In case you wanted to compare vmstat outputs

Valgrind --tool massif

This is the head of output from ms_print after valgrind --tool=massif ./ompmemtest (default malloc):

--------------------------------------------------------------------------------
Command:            ./ompmemtest
Massif arguments:   (none)
ms_print arguments: massif.out.beforetcmalloc
--------------------------------------------------------------------------------


    GB
1.009^                                                                     :  
     |       ##::::@@:::::::@@::::::@@::::@@::@::::@::::@:::::::::@::::::@::: 
     |       # :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::: 
     |       # :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::: 
     |      :# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::: 
     |      :# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::: 
     |      :# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |     ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |     ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |     ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |     ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |     ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |   ::::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |   : ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |   : ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |  :: ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     |  :: ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     | ::: ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     | ::: ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
     | ::: ::# :: :@ :::: ::@ : ::::@ :: :@ ::@::::@: ::@:::::: ::@::::::@::::
   0 +----------------------------------------------------------------------->Gi
     0                                                                   264.0

Number of snapshots: 63
 Detailed snapshots: [6 (peak), 10, 17, 23, 27, 30, 35, 39, 48, 56]

Google HEAPPROFILE

Unfortunately, vanilla valgrind doesn’t work with tcmalloc, so I switched horses midrace to heap profiling with google-perftools

gcc openMpMemtest_Linux.cpp -fopenmp -lgomp -lstdc++ -ltcmalloc -o ompmemtest

time HEAPPROFILE=/tmp/heapprofile ./ompmemtest
Starting tracking the heap
Dumping heap profile to /tmp/heapprofile.0001.heap (100 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0002.heap (200 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0003.heap (300 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0004.heap (400 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0005.heap (501 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0006.heap (601 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0007.heap (701 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0008.heap (801 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0009.heap (902 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0010.heap (1002 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0011.heap (2029 MB allocated cumulatively, 1031 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0012.heap (3053 MB allocated cumulatively, 1030 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0013.heap (4078 MB allocated cumulatively, 1031 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0014.heap (5102 MB allocated cumulatively, 1031 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0015.heap (6126 MB allocated cumulatively, 1033 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0016.heap (7151 MB allocated cumulatively, 1029 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0017.heap (8175 MB allocated cumulatively, 1029 MB currently in use)
Dumping heap profile to /tmp/heapprofile.0018.heap (9199 MB allocated cumulatively, 1028 MB currently in use)
Id 0 about to release all memory: 258.144 MB
Id 0 done, total alloc'ed -1572.7MB 
Id 2 about to release all memory: 257.043 MB
Id 2 done, total alloc'ed -1569.96MB 
Id 3 about to release all memory: 257.854 MB
Id 3 done, total alloc'ed -1569.6MB 
Id 1 about to release all memory: 257.339 MB
Id 1 done, total alloc'ed -1570.42MB 
Dumping heap profile to /tmp/heapprofile.0019.heap (Exiting)

real    0m11.981s
user    0m44.455s
sys 0m1.124s

Contact me for full logs/details

Update

To the comments: I updated the program

--- omptest/openMpMemtest_Linux.cpp 2011-05-03 23:18:44.000000000 +0200
+++ q/openMpMemtest_Linux.cpp   2011-05-04 13:42:47.371726000 +0200
@@ -13,8 +13,8 @@
 void runParallelAllocTest()
 {
    // constants
-   const int  NUM_ALLOCATIONS = 5000; // alloc's per thread
-   const int  NUM_THREADS = 4;       // how many threads?
+   const int  NUM_ALLOCATIONS = 55000; // alloc's per thread
+   const int  NUM_THREADS = 8;        // how many threads?
    const int  NUM_ITERS = NUM_THREADS;// how many overall repetions

    const bool USE_NEW      = true;   // use new or malloc? , seems to make no difference (as it should)

It ran for over 5m3s. Close to the end, a screenshot of htop teaches that indeed, the reserved set is slightly higher, going towards 2.3g:

  1  [||||||||||||||||||||||||||||||||||||||||||||||||||96.7%]     Tasks: 125 total, 2 running
  2  [||||||||||||||||||||||||||||||||||||||||||||||||||96.7%]     Load average: 8.09 5.24 2.37 
  3  [||||||||||||||||||||||||||||||||||||||||||||||||||97.4%]     Uptime: 01:54:22
  4  [||||||||||||||||||||||||||||||||||||||||||||||||||96.1%]
  Mem[|||||||||||||||||||||||||||||||             3055/7936MB]
  Swp[                                                  0/0MB]

  PID USER     NLWP PRI  NI  VIRT   RES   SHR S CPU% MEM%   TIME+  Command
 4330 sehe        8  20   0 2635M 2286M   908 R 368. 28.8 15:35.01 ./ompmemtest

Comparing results with a tcmalloc run: 4m12s, similar top stats has minor differences; the big difference is in the VIRT set (but that isn’t particularly useful unless you have a very limited address space per process?). The RES set is quite similar, if you ask me. The more important thing to note is parallellism is increased; all cores are now maxed out. This is obviously due to reduced need to lock for heap operations when using tcmalloc:

If the free list is empty: (1) We fetch a bunch of objects from a central free list for this size-class (the central free list is shared by all threads). (2) Place them in the thread-local free list. (3) Return one of the newly fetched objects to the applications.

  1  [|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||100.0%]     Tasks: 172 total, 2 running
  2  [|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||100.0%]     Load average: 7.39 2.92 1.11 
  3  [|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||100.0%]     Uptime: 11:12:25
  4  [|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||100.0%]
  Mem[||||||||||||||||||||||||||||||||||||||||||||              3278/7936MB]
  Swp[                                                                0/0MB]

  PID USER     NLWP PRI  NI  VIRT   RES   SHR S CPU% MEM%   TIME+  Command
14391 sehe        8  20   0 2251M 2179M  1148 R 379. 27.5  8:08.92 ./ompmemtest

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