Copy-item Files in Folders and subfolders in the same directory structure of source server using PowerShell

This can be done just using Copy-Item. No need to use Get-Childitem. I think you are just overthinking it.

Copy-Item -Path C:\MyFolder -Destination \\Server\MyFolder -recurse -Force

I just tested it and it worked for me.

edit: included suggestion from the comments

# Add wildcard to source folder to ensure consistent behavior
Copy-Item -Path $sourceFolder\* -Destination $targetFolder -Recurse